Plot 2D


Distribution of the seed's family hits : 2D plot

Description of the plot:
Pair containing protein outside of the seed family Both proteins inside the seed family




Plot 3D


Distribution of the seed's family hits : 3D plot

Description of the plot:
  • Family: This term is use to refer to your seed and all the sequences annotated as ortholog using your thresholds
  • In family: Refer to pairs of proteins that are both inside the seed family
  • Out family: Refer to pairs of proteins with only one is inside the seed family

  • This plot shows the population of pair of hits from the NCBI Blast ALL VS ALL part of the analysis. Each point represent a pair of two proteins. The hits are plot using the percentage of identity against the coverage against the e-value of the blast alignment of the two proteins. You can change the scale of the e-value axis from linear to log by clicking on the button.

    WARNING:: This plot is memory consuming be sure to have enough memory to handle it

Pair containing protein outside of the seed family Both proteins inside the seed family