Plot 2D
Distribution of the seed's family hits : 2D plot
Description of the plot:- Family: This term is use to refer to your seed and all the sequences annotated as ortholog using your thresholds
- In family: Refer to pairs of proteins that are both inside the seed family
- Out family: Refer to pairs of proteins with only one is inside the seed family
This plot shows the population of pair of hits from the NCBI Blast ALL VS ALL part of the analysis. Each point represent a pair of two proteins. The hits are plot using the percentage of identity against the coverage of the blast alignment of the two proteins. The histogram on top and bottom represent the distribution of respectively the percentage of identity and the coverage of your hits population.
Pair containing protein outside of the seed family Both proteins inside the seed family
Plot 3D
Distribution of the seed's family hits : 3D plot
Description of the plot:- Family: This term is use to refer to your seed and all the sequences annotated as ortholog using your thresholds
- In family: Refer to pairs of proteins that are both inside the seed family
- Out family: Refer to pairs of proteins with only one is inside the seed family
This plot shows the population of pair of hits from the NCBI Blast ALL VS ALL part of the analysis. Each point represent a pair of two proteins. The hits are plot using the percentage of identity against the coverage against the e-value of the blast alignment of the two proteins. You can change the scale of the e-value axis from linear to log by clicking on the button.
WARNING:: This plot is memory consuming be sure to have enough memory to handle it